PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G027900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 211aa MW: 22040.6 Da PI: 6.8556

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G027900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	85	132	1	48
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e++l+r +rk++NRe+ArrsR+R++++ e Le+ ++eL a+++aL+ + Sevir.2G027900.1.p 85 EERLRRLKRKISNRESARRSRARRRQQAEDLERAAEELRAQRRALAAR 132 789*****************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-8	81	132	No hit	No description
SMART	SM00338	1.5E-5	85	149	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.7E-7	85	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.91	87	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-6	89	134	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSLDEAMLLD LDFAGAPPGM DVAYGFGFDF DFDFDTAAAS GASGGFDFDT TECGAAAGTG 60 SGTTSPPVDA STKAGSSGID DDDDEERLRR LKRKISNRES ARRSRARRRQ QAEDLERAAE 120 ELRAQRRALA ARRDAAAARA LAVRLDNARL GAEAGALRRR LREAQRQAVL LLALARAQMA 180 PSAVGIGGGR ALQVVPPQPA GGSATGMMTS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459298.1	8e-13	hypothetical protein SORBIDRAFT_02g001970
TrEMBL	K4A0N9	1e-141	K4A0N9_SETIT; Uncharacterized protein
STRING	Si032429m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP32114	4	4

Link Out ? help Back to Top
Phytozome	Sevir.2G027900.1.p